HL_7LS1_077
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_077 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.1452
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
7LS1|1|C2|C|47
7LS1|1|C2|A|48
7LS1|1|C2|G|49
7LS1|1|C2|C|50
7LS1|1|C2|U|51
7LS1|1|C2|A|52
7LS1|1|C2|G|53
7LS1|1|C2|C|54
7LS1|1|C2|U|55
7LS1|1|C2|G|56
Current chains
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain R2
- 60S ribosomal protein L23a
- Chain b2
- 60S ribosomal protein L35
- Chain d2
- 60S ribosomal protein L37
- Chain f2
- 60S ribosomal protein L39
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