HL_7LS1_080

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

7LS1|1|C2|C|125, 7LS1|1|C2|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_080 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.341

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7LS1|1|C2|G|121
7LS1|1|C2|G|122
7LS1|1|C2|U|123
7LS1|1|C2|U|124
7LS1|1|C2|C|125
7LS1|1|C2|C|126
7LS1|1|C2|U|127
7LS1|1|C2|C|128
7LS1|1|C2|C|129

Current chains

Chain C2

5.8S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain R2

60S ribosomal protein L23a