HL_7LS1_085

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_085 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1838

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7LS1|1|m2|G|291
7LS1|1|m2|U|292
7LS1|1|m2|G|293
7LS1|1|m2|A|294
7LS1|1|m2|C|295

Current chains

Chain m2

28S rRNA

Nearby chains

Chain r2

40S ribosomal protein S4, X isoform

Chain w2

40S ribosomal protein S11