HL_7LS1_090

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7LS1|1|m2|A|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_090 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.5426

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7LS1|1|m2|C|464
7LS1|1|m2|C|465
7LS1|1|m2|A|466
7LS1|1|m2|A|467
7LS1|1|m2|G|468
7LS1|1|m2|G|469

Current chains

Chain m2

28S rRNA

Nearby chains

Chain K3

40S ribosomal protein S6

Chain P2

60S ribosomal protein L23