HL_7LS1_097

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAGCCG

Length

7 nucleotides

Bulged bases

7LS1|1|m2|G|838, 7LS1|1|m2|A|839, 7LS1|1|m2|G|840, 7LS1|1|m2|C|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_097 not in the Motif Atlas

Geometric match to HL_6AAX_001

Geometric discrepancy: 0.2066

The information below is about HL_6AAX_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7LS1|1|m2|C|837
7LS1|1|m2|G|838
7LS1|1|m2|A|839
7LS1|1|m2|G|840
7LS1|1|m2|C|841
7LS1|1|m2|C|842
7LS1|1|m2|G|843

Current chains

Chain m2

28S rRNA

Nearby chains

Chain L3

40S ribosomal protein S9

Chain Q3

40S ribosomal protein S24