HL_7LS1_104

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_104 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.1053

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7LS1|1|m2|U|1180
7LS1|1|m2|G|1181
7LS1|1|m2|C|1182
7LS1|1|m2|A|1183
7LS1|1|m2|A|1184
7LS1|1|m2|A|1185

Current chains

Chain m2

28S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain h2

60S ribosomal protein L41

Chain j2

60S ribosomal protein L37a