HL_7LS1_110
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGUUCAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_110 not in the Motif Atlas
- Homologous match to HL_4V88_217
- Geometric discrepancy: 0.4706
- The information below is about HL_4V88_217
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.9
- Basepair signature
- cWW-cWW-F-tSH
- Number of instances in this motif group
- 9
Unit IDs
7LS1|1|m2|C|1462
7LS1|1|m2|G|1463
7LS1|1|m2|U|1464
7LS1|1|m2|U|1465
7LS1|1|m2|C|1466
7LS1|1|m2|A|1467
7LS1|1|m2|G|1468
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain G3
- 40S ribosomal protein S28
- Chain I3
- Receptor of activated protein C kinase 1
- Chain o2
- 40S ribosomal protein SA
- Chain z2
- 40S ribosomal protein S17
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