HL_7LS1_111

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_111 not in the Motif Atlas

Geometric match to HL_4WF9_031

Geometric discrepancy: 0.3349

The information below is about HL_4WF9_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

7LS1|1|m2|C|1567
7LS1|1|m2|G|1568
7LS1|1|m2|G|1569
7LS1|1|m2|C|1570
7LS1|1|m2|A|1571
7LS1|1|m2|G|1572

Current chains

Chain m2

28S rRNA

Nearby chains

Chain A3

40S ribosomal protein S18

Chain B3

40S ribosomal protein S19