HL_7LS1_115

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

7LS1|1|n2|C|17, 7LS1|1|n2|G|18, 7LS1|1|n2|G|19, 7LS1|1|n2|A|20, 7LS1|1|n2|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_115 not in the Motif Atlas

Homologous match to HL_2AKE_001

Geometric discrepancy: 0.4875

The information below is about HL_2AKE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27981.1

Basepair signature

cWW-cWS

Number of instances in this motif group

2

Unit IDs

7LS1|1|n2|C|14
7LS1|1|n2|A|15
7LS1|1|n2|G|16
7LS1|1|n2|C|17
7LS1|1|n2|G|18
7LS1|1|n2|G|19
7LS1|1|n2|A|20
7LS1|1|n2|A|21
7LS1|1|n2|G|22

Current chains

Chain n2

tRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain L1

60S ribosomal protein L10a