HL_7LS1_118

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAA(OMG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_118 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.2328

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7LS1|1|A2|C|368
7LS1|1|A2|G|369
7LS1|1|A2|U|370
7LS1|1|A2|A|371
7LS1|1|A2|A|372
7LS1|1|A2|OMG|373

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain d2

60S ribosomal protein L37

Chain f2

60S ribosomal protein L39