HL_7LS1_121
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCUCGUCCGAAAGC
- Length
- 14 nucleotides
- Bulged bases
- 7LS1|1|A2|C|1179, 7LS1|1|A2|G|1180, 7LS1|1|A2|U|1181, 7LS1|1|A2|A|1185
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7LS1_121 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.1986
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7LS1|1|A2|G|1176
7LS1|1|A2|C|1177
7LS1|1|A2|U|1178
7LS1|1|A2|C|1179
7LS1|1|A2|G|1180
7LS1|1|A2|U|1181
7LS1|1|A2|C|1182
7LS1|1|A2|C|1183
7LS1|1|A2|G|1184
7LS1|1|A2|A|1185
7LS1|1|A2|A|1186
7LS1|1|A2|A|1187
7LS1|1|A2|G|1188
7LS1|1|A2|C|1189
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F1
- 60S ribosomal protein L13
- Chain F2
- 60S ribosomal protein L4
- Chain H1
- 60S ribosomal protein L15
- Chain S2
- 60S ribosomal protein L26
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