HL_7LS1_122

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUUCUCUUUU

Length

11 nucleotides

Bulged bases

7LS1|1|A2|U|2386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_122 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3772

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

7LS1|1|A2|A|2378
7LS1|1|A2|G|2379
7LS1|1|A2|U|2380
7LS1|1|A2|U|2381
7LS1|1|A2|C|2382
7LS1|1|A2|U|2383
7LS1|1|A2|C|2384
7LS1|1|A2|U|2385
7LS1|1|A2|U|2386
7LS1|1|A2|U|2387
7LS1|1|A2|U|2388

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain O2

60S ribosomal protein L22