HL_7LS1_123

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LS1_123 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.2681

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7LS1|1|A2|A|3380
7LS1|1|A2|G|3381
7LS1|1|A2|A|3382
7LS1|1|A2|A|3383
7LS1|1|A2|A|3384
7LS1|1|A2|PSU|3385

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L1

60S ribosomal protein L10a

Chain c2

60S ribosomal protein L36

Chain i2

60S ribosomal protein L36a