HL_7LVK_011

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

7LVK|1|I|G|329, 7LVK|1|I|A|330, 7LVK|1|I|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7LVK_011 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0859

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

7LVK|1|I|G|327
7LVK|1|I|U|328
7LVK|1|I|G|329
7LVK|1|I|A|330
7LVK|1|I|C|331
7LVK|1|I|A|332
7LVK|1|I|G|333
7LVK|1|I|C|334
7LVK|1|I|C|335

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

50S ribosomal protein L24