3D structure

PDB id
7LVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified 50S subunit from Escherichia coli
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GUUAAUAUUC
Length
10 nucleotides
Bulged bases
7LVK|1|I|U|1396, 7LVK|1|I|U|1397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7LVK_035 not in the Motif Atlas
Homologous match to HL_5J7L_168
Geometric discrepancy: 0.0783
The information below is about HL_5J7L_168
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81545.2
Basepair signature
cWW-tWH-F-F-F-F
Number of instances in this motif group
7

Unit IDs

7LVK|1|I|G|1389
7LVK|1|I|U|1390
7LVK|1|I|U|1391
7LVK|1|I|A|1392
7LVK|1|I|A|1393
7LVK|1|I|U|1394
7LVK|1|I|A|1395
7LVK|1|I|U|1396
7LVK|1|I|U|1397
7LVK|1|I|C|1398

Current chains

Chain I
23S rRNA

Nearby chains

Chain b
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0471 s