HL_7M4Y_076

3D structure

PDB id

7M4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Y_076 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0839

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7M4Y|1|a|G|316
7M4Y|1|a|A|317
7M4Y|1|a|C|318
7M4Y|1|a|U|319
7M4Y|1|a|G|320
7M4Y|1|a|A|321
7M4Y|1|a|G|322
7M4Y|1|a|A|323
7M4Y|1|a|C|324
7M4Y|1|a|A|325
7M4Y|1|a|C|326
7M4Y|1|a|G|327
7M4Y|1|a|G|328
7M4Y|1|a|C|329

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20