HL_7M4Y_101

3D structure

PDB id

7M4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAGUUGG(H2U)UAG

Length

11 nucleotides

Bulged bases

7M4Y|1|v|U|16, 7M4Y|1|v|U|17, 7M4Y|1|v|G|18, 7M4Y|1|v|G|19, 7M4Y|1|v|U|21

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M4Y_101 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.1878

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7M4Y|1|v|C|13
7M4Y|1|v|A|14
7M4Y|1|v|G|15
7M4Y|1|v|U|16
7M4Y|1|v|U|17
7M4Y|1|v|G|18
7M4Y|1|v|G|19
7M4Y|1|v|H2U|20
7M4Y|1|v|U|21
7M4Y|1|v|A|22
7M4Y|1|v|G|23

Current chains

Chain v

tRNA-met

Nearby chains