HL_7M5D_036

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7M5D|1|1|A|1453, 7M5D|1|1|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M5D_036 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.1311

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7M5D|1|1|C|1451
7M5D|1|1|G|1452
7M5D|1|1|A|1453
7M5D|1|1|C|1454
7M5D|1|1|G|1455
7M5D|1|1|G|1456
7M5D|1|1|U|1457
7M5D|1|1|U|1458
7M5D|1|1|G|1459

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17