HL_7M5D_060

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M5D_060 not in the Motif Atlas

Geometric match to HL_4WF9_056

Geometric discrepancy: 0.2016

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7M5D|1|1|A|2471
7M5D|1|1|G|2472
7M5D|1|1|U|2473
7M5D|1|1|U|2474
7M5D|1|1|C|2475
7M5D|1|1|A|2476
7M5D|1|1|U|2477
7M5D|1|1|A|2478
7M5D|1|1|U|2479

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

Peptide chain release factor 1

Chain F

50S ribosomal protein L6

Chain f

50S ribosomal protein L36