3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
7M5D|1|2|U|421
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7M5D_080 not in the Motif Atlas
Homologous match to HL_4LFB_011
Geometric discrepancy: 0.11
The information below is about HL_4LFB_011
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

7M5D|1|2|C|419
7M5D|1|2|U|420
7M5D|1|2|U|421
7M5D|1|2|C|422
7M5D|1|2|G|423
7M5D|1|2|G|424

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain h
30S ribosomal protein S3
Chain i
30S ribosomal protein S4

Coloring options:


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