HL_7M5D_081

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

7M5D|1|2|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7M5D_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1252

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7M5D|1|2|G|462
7M5D|1|2|U|463
7M5D|1|2|U|464
7M5D|1|2|A|465
7M5D|1|2|A|466
7M5D|1|2|U|467
7M5D|1|2|A|468
7M5D|1|2|C|469
7M5D|1|2|C|470

Current chains

Chain 2

16S ribosomal RNA

Nearby chains