HL_7M5D_103
3D structure
- PDB id
- 7M5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 7M5D|1|5|G|18, 7M5D|1|5|G|19
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7M5D_103 not in the Motif Atlas
- Geometric match to HL_6JXM_001
- Geometric discrepancy: 0.1509
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
7M5D|1|5|C|12
7M5D|1|5|A|13
7M5D|1|5|G|14
7M5D|1|5|C|15
7M5D|1|5|C|16
7M5D|1|5|U|17
7M5D|1|5|G|18
7M5D|1|5|G|19
7M5D|1|5|H2U|20
7M5D|1|5|A|21
7M5D|1|5|G|22
Current chains
- Chain 5
- P-tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
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