3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
G(5MU)(PSU)CAAAUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7M5D_105 not in the Motif Atlas
Geometric match to HL_5NFV_001
Geometric discrepancy: 0.1801
The information below is about HL_5NFV_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.2
Basepair signature
cWW-F
Number of instances in this motif group
7

Unit IDs

7M5D|1|5|G|53
7M5D|1|5|5MU|54
7M5D|1|5|PSU|55
7M5D|1|5|C|56
7M5D|1|5|A|57
7M5D|1|5|A|58
7M5D|1|5|A|59
7M5D|1|5|U|60
7M5D|1|5|C|61

Current chains

Chain 5
P-tRNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain E
50S ribosomal protein L5
Chain M
50S ribosomal protein L16

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