HL_7M5D_105
3D structure
- PDB id
- 7M5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7M5D_105 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.1801
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7M5D|1|5|G|53
7M5D|1|5|5MU|54
7M5D|1|5|PSU|55
7M5D|1|5|C|56
7M5D|1|5|A|57
7M5D|1|5|A|58
7M5D|1|5|A|59
7M5D|1|5|U|60
7M5D|1|5|C|61
Current chains
- Chain 5
- P-tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L16
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