HL_7MD7_005

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

7MD7|1|1A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MD7_005 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.0456

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

7MD7|1|1A|G|194
7MD7|1|1A|A|195
7MD7|1|1A|A|196
7MD7|1|1A|A|197
7MD7|1|1A|C|198
7MD7|1|1A|A|199
7MD7|1|1A|U|200
7MD7|1|1A|C|201

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1P

50S ribosomal protein L15