HL_7MD7_028
3D structure
- PDB id
- 7MD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCUUAGAAGCAGC
- Length
- 13 nucleotides
- Bulged bases
- 7MD7|1|1A|A|1070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MD7_028 not in the Motif Atlas
- Homologous match to HL_7RQB_029
- Geometric discrepancy: 0.2778
- The information below is about HL_7RQB_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MD7|1|1A|G|1063
7MD7|1|1A|C|1064
7MD7|1|1A|U|1065
7MD7|1|1A|U|1066
7MD7|1|1A|A|1067
7MD7|1|1A|G|1068
7MD7|1|1A|A|1069
7MD7|1|1A|A|1070
7MD7|1|1A|G|1071
7MD7|1|1A|C|1072
7MD7|1|1A|A|1073
7MD7|1|1A|G|1074
7MD7|1|1A|C|1075
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
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