HL_7MD7_086

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MD7_086 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.0951

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7MD7|1|1a|C|726
7MD7|1|1a|G|727
7MD7|1|1a|A|728
7MD7|1|1a|A|729
7MD7|1|1a|G|730
7MD7|1|1a|G|731

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1o

30S ribosomal protein S15

Chain 1r

30S ribosomal protein S18