HL_7MD7_153

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7MD7|1|2A|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MD7_153 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0657

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

7MD7|1|2A|G|1949
7MD7|1|2A|G|1950
7MD7|1|2A|U|1951
7MD7|1|2A|A|1952
7MD7|1|2A|A|1953
7MD7|1|2A|G|1954
7MD7|1|2A|U|1955
7MD7|1|2A|U|1956
7MD7|1|2A|C|1957

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14

Chain 2a

Small subunit ribosomal RNA; SSU rRNA