HL_7MD7_181

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

7MD7|1|2a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MD7_181 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.1686

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7MD7|1|2a|G|259
7MD7|1|2a|G|260
7MD7|1|2a|U|261
7MD7|1|2a|A|262
7MD7|1|2a|A|263
7MD7|1|2a|U|264
7MD7|1|2a|G|265
7MD7|1|2a|G|266
7MD7|1|2a|C|267

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2q

30S ribosomal protein S17

Chain 2t

30S ribosomal protein S20