HL_7MD7_217

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

7MD7|1|2A|U|2144, 7MD7|1|2A|C|2145, 7MD7|1|2A|C|2146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MD7_217 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3831

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7MD7|1|2A|C|2142
7MD7|1|2A|C|2143
7MD7|1|2A|U|2144
7MD7|1|2A|C|2145
7MD7|1|2A|C|2146
7MD7|1|2A|G|2147
7MD7|1|2A|G|2148
7MD7|1|2A|G|2149

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains