HL_7MDZ_031

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_031 not in the Motif Atlas

Homologous match to HL_5TBW_028

Geometric discrepancy: 0.5293

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7MDZ|1|5|G|2005
7MDZ|1|5|U|2006
7MDZ|1|5|G|2007
7MDZ|1|5|U|2008
7MDZ|1|5|A|2009
7MDZ|1|5|A|2010
7MDZ|1|5|C|2011
7MDZ|1|5|A|2012
7MDZ|1|5|A|2013
7MDZ|1|5|C|2014

Current chains

Chain 5

28S rRNA

Nearby chains

Chain m

eL40