HL_7MDZ_032
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 7MDZ|1|5|C|2094, 7MDZ|1|5|U|2267, 7MDZ|1|5|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7MDZ|1|5|C|2087
7MDZ|1|5|A|2088
7MDZ|1|5|G|2089
7MDZ|1|5|U|2090
7MDZ|1|5|C|2091
7MDZ|1|5|G|2092
7MDZ|1|5|G|2093
7MDZ|1|5|C|2094
7MDZ|1|5|A|2095
7MDZ|1|5|G|2096
7MDZ|1|5|A|2097
7MDZ|1|5|G|2098
7MDZ|1|5|C|2099
7MDZ|1|5|G|2100
7MDZ|1|5|A|2101
7MDZ|1|5|G|2102
7MDZ|1|5|A|2103
7MDZ|1|5|A|2104
7MDZ|1|5|A|2105
7MDZ|1|5|G|2106
7MDZ|1|5|A|2107
7MDZ|1|5|G|2108
7MDZ|1|5|A|2109
7MDZ|1|5|G|2110
7MDZ|1|5|U|2111
7MDZ|1|5|G|2112
7MDZ|1|5|G|2113
7MDZ|1|5|C|2258
7MDZ|1|5|G|2259
7MDZ|1|5|C|2260
7MDZ|1|5|G|2261
7MDZ|1|5|G|2262
7MDZ|1|5|A|2263
7MDZ|1|5|C|2264
7MDZ|1|5|G|2265
7MDZ|1|5|C|2266
7MDZ|1|5|U|2267
7MDZ|1|5|A|2268
7MDZ|1|5|C|2269
7MDZ|1|5|G|2270
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain F
- 60S ribosomal protein L7
- Chain Q
- Ribosomal protein L18
- Chain b
- 60S ribosomal protein L29
- Chain r
- eL28
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