HL_7MDZ_034

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_034 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1894

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7MDZ|1|5|A|2376
7MDZ|1|5|C|2377
7MDZ|1|5|G|2378
7MDZ|1|5|A|2379
7MDZ|1|5|G|2380
7MDZ|1|5|A|2381
7MDZ|1|5|A|2382
7MDZ|1|5|C|2383
7MDZ|1|5|U|2384

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

Ribosomal protein L19

Chain d

eL31