3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGCAGUU
Length
7 nucleotides
Bulged bases
7MDZ|1|5|G|2421, 7MDZ|1|5|U|2425
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7MDZ_035 not in the Motif Atlas
Homologous match to HL_5TBW_032
Geometric discrepancy: 0.1916
The information below is about HL_5TBW_032
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_40756.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

7MDZ|1|5|A|2420
7MDZ|1|5|G|2421
7MDZ|1|5|C|2422
7MDZ|1|5|A|2423
7MDZ|1|5|G|2424
7MDZ|1|5|U|2425
7MDZ|1|5|U|2426

Current chains

Chain 5
28S rRNA

Nearby chains

Chain P
uL22
Chain R
Ribosomal protein L19
Chain l
eL39

Coloring options:


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