HL_7MDZ_041

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

7MDZ|1|5|C|2627, 7MDZ|1|5|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_041 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.3197

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7MDZ|1|5|G|2624
7MDZ|1|5|U|2625
7MDZ|1|5|U|2626
7MDZ|1|5|C|2627
7MDZ|1|5|U|2628
7MDZ|1|5|C|2629
7MDZ|1|5|U|2630
7MDZ|1|5|U|2631
7MDZ|1|5|U|2632

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain U

eL22