HL_7MDZ_043

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_043 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2196

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7MDZ|1|5|G|2705
7MDZ|1|5|G|2706
7MDZ|1|5|U|2707
7MDZ|1|5|U|2708
7MDZ|1|5|C|2709
7MDZ|1|5|C|2710

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19