HL_7MDZ_055

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7MDZ|1|5|A|3876, 7MDZ|1|5|A|3877, 7MDZ|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0997

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7MDZ|1|5|G|3873
7MDZ|1|5|G|3874
7MDZ|1|5|G|3875
7MDZ|1|5|A|3876
7MDZ|1|5|A|3877
7MDZ|1|5|C|3878
7MDZ|1|5|G|3879
7MDZ|1|5|G|3880
7MDZ|1|5|G|3881
7MDZ|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain e

eL32