HL_7MDZ_056

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7MDZ|1|5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_056 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1214

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7MDZ|1|5|C|4193
7MDZ|1|5|U|4194
7MDZ|1|5|G|4195
7MDZ|1|5|G|4196
7MDZ|1|5|G|4197
7MDZ|1|5|G|4198
7MDZ|1|5|C|4199
7MDZ|1|5|G|4200
7MDZ|1|5|G|4201

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain I

60S ribosomal protein L10

Chain b

60S ribosomal protein L29