HL_7MDZ_058

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_058 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1702

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7MDZ|1|5|G|4250
7MDZ|1|5|A|4251
7MDZ|1|5|C|4252
7MDZ|1|5|A|4253
7MDZ|1|5|G|4254
7MDZ|1|5|A|4255
7MDZ|1|5|A|4256
7MDZ|1|5|A|4257
7MDZ|1|5|C|4258

Current chains

Chain 5

28S rRNA

Nearby chains

Chain J

60S ribosomal protein L11