HL_7MDZ_065

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_065 not in the Motif Atlas

Homologous match to HL_5TBW_063

Geometric discrepancy: 0.1065

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7MDZ|1|5|U|4497
7MDZ|1|5|U|4498
7MDZ|1|5|G|4499
7MDZ|1|5|U|4500
7MDZ|1|5|U|4501
7MDZ|1|5|C|4502
7MDZ|1|5|A|4503

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3