HL_7MDZ_066
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MDZ_066 not in the Motif Atlas
- Homologous match to HL_5TBW_064
- Geometric discrepancy: 0.0907
- The information below is about HL_5TBW_064
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
7MDZ|1|5|C|4540
7MDZ|1|5|G|4541
7MDZ|1|5|U|4542
7MDZ|1|5|G|4543
7MDZ|1|5|A|4544
7MDZ|1|5|G|4545
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain A
- Ribosomal protein L8
Coloring options: