HL_7MDZ_069

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7MDZ|1|5|G|4694, 7MDZ|1|5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_069 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0707

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7MDZ|1|5|C|4688
7MDZ|1|5|U|4689
7MDZ|1|5|G|4690
7MDZ|1|5|A|4691
7MDZ|1|5|A|4692
7MDZ|1|5|C|4693
7MDZ|1|5|G|4694
7MDZ|1|5|C|4695
7MDZ|1|5|C|4696
7MDZ|1|5|U|4697
7MDZ|1|5|C|4698
7MDZ|1|5|U|4699
7MDZ|1|5|A|4700
7MDZ|1|5|A|4701
7MDZ|1|5|G|4702

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

uL13

Chain m

eL40