HL_7MDZ_071

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

7MDZ|1|5|A|4910, 7MDZ|1|5|A|4911, 7MDZ|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_071 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1641

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7MDZ|1|5|C|4906
7MDZ|1|5|G|4907
7MDZ|1|5|G|4908
7MDZ|1|5|A|4909
7MDZ|1|5|A|4910
7MDZ|1|5|A|4911
7MDZ|1|5|G|4912
7MDZ|1|5|G|4913
7MDZ|1|5|G|4914
7MDZ|1|5|G|4915

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13