HL_7MDZ_072

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7MDZ|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_072 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1222

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7MDZ|1|5|G|4975
7MDZ|1|5|U|4976
7MDZ|1|5|A|4977
7MDZ|1|5|G|4978
7MDZ|1|5|A|4979
7MDZ|1|5|C|4980
7MDZ|1|5|G|4981
7MDZ|1|5|A|4982
7MDZ|1|5|C|4983

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22