HL_7MDZ_089

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7MDZ|1|9|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_089 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1709

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7MDZ|1|9|C|462
7MDZ|1|9|C|463
7MDZ|1|9|A|464
7MDZ|1|9|A|465
7MDZ|1|9|G|466
7MDZ|1|9|G|467

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain V

Ribosomal protein L23