HL_7MDZ_092

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_092 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1911

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7MDZ|1|9|A|569
7MDZ|1|9|C|570
7MDZ|1|9|U|571
7MDZ|1|9|U|572
7MDZ|1|9|U|573
7MDZ|1|9|A|574
7MDZ|1|9|A|575
7MDZ|1|9|A|576
7MDZ|1|9|U|577
7MDZ|1|9|C|578
7MDZ|1|9|C|579
7MDZ|1|9|U|580
7MDZ|1|9|U|581

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain YY

40S ribosomal protein S24