HL_7MDZ_110

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MDZ_110 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.4166

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7MDZ|1|9|C|1460
7MDZ|1|9|G|1461
7MDZ|1|9|U|1462
7MDZ|1|9|U|1463
7MDZ|1|9|C|1464
7MDZ|1|9|A|1465
7MDZ|1|9|G|1466

Current chains

Chain 9

18S rRNA

Nearby chains

Chain RR

eS17

Chain gg

RACK1