3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUCAUAAGC
Length
9 nucleotides
Bulged bases
7MDZ|1|9|G|1665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7MDZ_113 not in the Motif Atlas
Homologous match to HL_4V88_220
Geometric discrepancy: 0.3343
The information below is about HL_4V88_220
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01927.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7MDZ|1|9|G|1658
7MDZ|1|9|U|1659
7MDZ|1|9|C|1660
7MDZ|1|9|A|1661
7MDZ|1|9|U|1662
7MDZ|1|9|A|1663
7MDZ|1|9|A|1664
7MDZ|1|9|G|1665
7MDZ|1|9|C|1666

Current chains

Chain 9
18S rRNA

Nearby chains

Chain QQ
uS9
Chain TT
eS19
Chain UU
uS10
Chain dd
eS29

Coloring options:


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