HL_7MDZ_118

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCUGGUGUGG

Length

11 nucleotides

Bulged bases

7MDZ|1|5|G|1815, 7MDZ|1|5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MDZ|1|5|C|1814
7MDZ|1|5|G|1815
7MDZ|1|5|C|1816
7MDZ|1|5|U|1817
7MDZ|1|5|G|1818
7MDZ|1|5|G|1819
7MDZ|1|5|U|1820
7MDZ|1|5|G|1821
7MDZ|1|5|U|1822
7MDZ|1|5|G|1823
7MDZ|1|5|G|1824

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain T

eL21

Chain b

60S ribosomal protein L29