HL_7MDZ_120

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCUGAGAAACGGC

Length

14 nucleotides

Bulged bases

7MDZ|1|9|C|450, 7MDZ|1|9|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MDZ|1|9|G|440
7MDZ|1|9|C|441
7MDZ|1|9|C|442
7MDZ|1|9|U|443
7MDZ|1|9|G|444
7MDZ|1|9|A|445
7MDZ|1|9|G|446
7MDZ|1|9|A|447
7MDZ|1|9|A|448
7MDZ|1|9|A|449
7MDZ|1|9|C|450
7MDZ|1|9|G|451
7MDZ|1|9|G|452
7MDZ|1|9|C|453

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

eS6

Chain II

eS8

Chain YY

40S ribosomal protein S24