HL_7MPJ_005

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7MPJ|1|A1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0641

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7MPJ|1|A1|U|194
7MPJ|1|A1|U|195
7MPJ|1|A1|G|196
7MPJ|1|A1|G|197
7MPJ|1|A1|A|198
7MPJ|1|A1|A|199
7MPJ|1|A1|C|200
7MPJ|1|A1|A|201

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

60S ribosomal protein L4-A

Chain AY

60S ribosomal protein L26-A

Chain Ae

60S ribosomal protein L32